User Tools

Site Tools


arcca:raven

This is an old revision of the document!


Raven

Raven is the new (late 2012) ARCCA cluster. It has 2000 Sandybridge cores with fast interconnect, and an additional 800 cores of Westmere which are set up for serial jobs.

If you have an account, you can log on with:

ssh ravenlogin.arcca.cf.ac.uk

Software

There is a lot of software available. You can see what there is by typing

 module avail

You load a module by typing, e.g.

 module load python/2.6.7

and can see what you currently have loaded with

 module list

LSC Required Software

There is a bunch of LSC software that you need to have installed (before even thinking about installing your analysis software) so that you can run. It is detailed at this DASWG page. Running through the list of things:

  • pkg-config: This is available by default on Raven (as /usr/bin/pkg-config). The installed version is 0.23, which seems to suffice
  • gsl: This is available as a module. So run
     module load gsl

    to pick this up. Current version is 1.15, which is more recent than version 1.12 listed on the DASWG page.

  • git: This is required to check out the LALSuite software stack. It should be available as a module, but isn't working yet. To work around the issue, I've installed version 1.8.1 in /home/spxsf2/opt/lscsoft/non-lsc.
  • fftw: This should be available as a module, but isn't working yet! I have installed it at /home/spxsf2/opt/lscsoft/. Note: the instructions call for fftw to be built twice – float and double. Not sure if this is still relevant and/or can be set up on Raven by default.
  • libframe/metaio/glue: This is LIGO specific software. It is not available as a module, but in the longer term, we should see if we can get it installed. For now, I downloaded the “stable” version from here and have installed (following the instructions here) at /home/spxsf2/opt/lscsoft/.
  • User environment script: This is to set up your environment, same instructions as for libframe and friends. It seems more complicated than strictly necessary. It winds up making the file lscsoft-user-env.sh. If you want to pick up the software I have installed, you need to run
    . /home/spxsf2/opt/lscsoft/lscsoft-user-env.sh

    I think that the majority of this is unnecessary. For now, I'll just source it, but if we do try installing our software as modules, then I think we should look at what's really needed here.

LALSuite

The LALSuite software contains much of the LSC's analysis code, including the CBC analysis. Instructions for getting it are at https://www.lsc-group.phys.uwm.edu/daswg/docs/howto/lal-install.html. The key steps are:

  • Check out the software with
    git clone albert.einstein@ligo-vcs.phys.uwm.edu:/usr/local/git/lalsuite.git
  • Then build it
    ./00boot
    mkdir build_master
    cd build_master
    ../configure --prefix=/home/spxsf2/opt/lalsuite/master
    make
    make install
  • This seems to work, other than “../../../lalinspiral/src/LALInspiralSBankOverlap.c:22:19: fatal error: fftw3.h: No such file or directory compilation terminated.” which I got around by removing this file from the make.
  • To pick up this install, you need to
    . /home/spxsf2/opt/lalsuite/master/etc/lscsoftsrc

I have successfully run a piece of LAL code (lalapps_tmpltbank to be precise), and it seems to have worked!

Grid tools

I'm trying to install the LIGO Data Grid Client, instructions here. It fails with the following issue: <code bash>/usr/bin/gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/home/spxsf2/opt/lscsoft/non-lsc/globus/include/globus -I/home/spxsf2/opt/lscsoft/non-lsc/globus/include/globus/gcc64dbg -g -m64 -Wall -DGLOBUS_PREFIX=\“/home/spxsf2/opt/lscsoft/non-lsc/globus\” -DGLOBUS_LIBDIR=\“/home/spxsf2/opt/lscsoft/non-lsc/globus/lib64\” -c globus_thread.c -fPIC -DPIC -o .libs/globus_thread.o globus_thread.c:38:18: error: ltdl.h: No such file or directory globus_thread.c: In function 'globus_i_thread_pre_activate': globus_thread.c:162: error: 'lt_dlhandle' undeclared (first use in this function) globus_thread.c:162: error: (Each undeclared identifier is reported only once globus_thread.c:162: error: for each function it appears in.) globus_thread.c:162: error: expected ';' before 'impl_lib' globus_thread.c:172: warning: implicit declaration of function 'lt_dlinit' globus_thread.c:173: warning: implicit declaration of function 'lt_dladdsearchdir' globus_thread.c:196: error: 'impl_lib' undeclared (first use in this function) globus_thread.c:196: warning: implicit declaration of function 'lt_dlopenext' globus_thread.c:199: warning: implicit declaration of function 'lt_dlerror' globus_thread.c:199: warning: format '%s' expects type 'char *', but argument 3 has type 'int' globus_thread.c:204: warning: implicit declaration of function 'lt_dlsym' globus_thread.c:207: warning: format '%s' expects type 'char *', but argument 2 has type 'int' globus_thread.c: In function 'globus_thread_exit': globus_thread.c:1383: warning: cast from pointer to integer of different size make[3]: * [globus_thread.lo] Error 1 make[3]: Leaving directory `/home/spxsf2/opt/src/gt5.2.3-all-source-installer/source-trees/common/source/library' make[2]: * [all-recursive] Error 1 make[2]: Leaving directory `/home/spxsf2/opt/src/gt5.2.3-all-source-installer/source-trees/common/source' make[1]: * [all] Error 2 make[1]: Leaving directory `/home/spxsf2/opt/src/gt5.2.3-all-source-installer/source-trees/common/source' make: * [globus_common-make] Error 2<\code> Any suggestions??

Data

Do we have any data and where is it?

arcca/raven.1354623293.txt.gz · Last modified: 2012/12/04 12:14 by stephen.fairhurst@LIGO.ORG